Index

_

__copy__() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1] __format__() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) __molecules (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem attribute) __repr__() (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem method) (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1]

__str__() (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem method) (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1]

A

add_to_catalogue() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) argument() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method)

atom_switch_mutation() (in module opt.single_objective.comb.drug_discovery_problem.solver)

C

calc_fitness() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) calculate_average_qed() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) calculate_quality_directly() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) ClickableGroupBox (class in opt.single_objective.comb.drug_discovery_problem.molecule_boxes) copy() (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem method), [1] (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method), [1] (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method), [1] (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1], [2], [3] (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver method), [1] (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem.OnesCountMinProblem method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem method)

copy_from() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) create_molecule_box() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) crossover() (in module opt.single_objective.comb.drug_discovery_problem.solver)

D

deletion_mutation() (in module opt.single_objective.comb.drug_discovery_problem.solver) dimension (opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem.MinOnesCountProblem property) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem property) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem attribute), [1] (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem property), [1] (opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem.OnesCountMinProblem property) dimension() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1] domain_from (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution property)

domain_high (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem property) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblemElements attribute) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem property) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblemElements attribute) domain_low (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem property) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblemElements attribute) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem property) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblemElements attribute) domain_to (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution property) DrugDiscoveryProblem (class in opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem)

E

enterEvent() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.ClickableGroupBox method) expression (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem property) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblemElements attribute) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem property) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblemElements attribute)

F

Fitness (class in opt.single_objective.comb.drug_discovery_problem.fitness) from_construction_tuple() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver class method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver class method), [1] from_dimension() (opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem.MinOnesCountProblem class method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem class method), [1] (opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem.OnesCountMinProblem class method) from_graph_and_source_terminal_pairs() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem class method) from_input_file() (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem class method) (opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem.MinOnesCountProblem class method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem class method), [1] (opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem.OnesCountMinProblem class method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem class method) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem class method)

from_input_files() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem class method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem class method) from_universe_and_subset_files() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem class method) FunctionOneVariableMaxProblem (class in opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem) FunctionOneVariableMaxProblemBinaryIntSolution (class in opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution) FunctionOneVariableMaxProblemElements (class in opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem) FunctionOneVariableMinProblem (class in opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem) FunctionOneVariableMinProblemElements (class in opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem)

G

GAParameters (class in opt.single_objective.comb.drug_discovery_problem.ga_parameters) genetic_algorithm() (in module opt.single_objective.comb.drug_discovery_problem.solver) get_best() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) get_description() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) get_form() (opt.single_objective.comb.drug_discovery_problem.insert_molecule.NewMoleculeForm method) get_GA_parameters_widget() (opt.single_objective.comb.drug_discovery_problem.ga_parameters.GAParameters method) get_input_description_text() (opt.single_objective.comb.drug_discovery_problem.insert_molecule.NewMoleculeForm method) get_input_smiles_text() (opt.single_objective.comb.drug_discovery_problem.insert_molecule.NewMoleculeForm method) get_precedent_scroll_area() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) get_qed() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method)

get_random_individual() (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem method), [1] get_second_scroll_area() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) get_selection_widget() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) get_sliders_widget() (opt.single_objective.comb.drug_discovery_problem.hyper_parameters.HyperParameters method) get_smiles() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) get_weights() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) graph (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem attribute) (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem property) graph() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) group_switch_mutation() (in module opt.single_objective.comb.drug_discovery_problem.solver)

H

HyperParameters (class in opt.single_objective.comb.drug_discovery_problem.hyper_parameters)

I

Individual (class in opt.single_objective.comb.drug_discovery_problem.individual) init() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver method), [1] init_from() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) init_random() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method)

insertion_mutation() (in module opt.single_objective.comb.drug_discovery_problem.solver) is_feasible_sol() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) is_minimization (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem attribute) is_multi_objective (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem attribute) is_valid_smiles() (in module opt.single_objective.comb.drug_discovery_problem.solver) (opt.single_objective.comb.drug_discovery_problem.individual.Individual method)

L

leaveEvent() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.ClickableGroupBox method) load_boxes() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method)

load_new_generation() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) load_selected_boxes() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method)

M

MinMultiCutProblem (class in opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem) MinMultiCutProblemBitArraySolution (class in opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution) MinOnesCountProblem (class in opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem) MinSetCoverProblem (class in opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem) MinSetCoverProblemBitArraySolution (class in opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution) MinSetCoverProblemIntegerLinearProgrammingSolution (class in opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy) MinSetCoverProblemIntegerLinearProgrammingSolver (class in opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy) MinSetCoverProblemIntegerLinearProgrammingSolverConstructionParameters (class in opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy) model (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver property) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver property), [1] module opt opt.multi_objective opt.single_objective opt.single_objective.comb opt.single_objective.comb.drug_discovery_problem opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem opt.single_objective.comb.drug_discovery_problem.fitness opt.single_objective.comb.drug_discovery_problem.ga_parameters opt.single_objective.comb.drug_discovery_problem.hyper_parameters opt.single_objective.comb.drug_discovery_problem.individual opt.single_objective.comb.drug_discovery_problem.insert_molecule opt.single_objective.comb.drug_discovery_problem.molecule_boxes opt.single_objective.comb.drug_discovery_problem.mutation_info opt.single_objective.comb.drug_discovery_problem.solver opt.single_objective.comb.min_multi_cut_problem opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution opt.single_objective.comb.min_ones_count_problem opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem opt.single_objective.comb.min_set_cover_problem opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy opt.single_objective.comb.ones_count_max_problem, [1] opt.single_objective.comb.ones_count_max_problem.command_line, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution opt.single_objective.comb.ones_count_min_problem opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem opt.single_objective.comb.traveling_salesperson_problem opt.single_objective.constraint opt.single_objective.glob opt.single_objective.glob.function_one_variable_max_problem opt.single_objective.glob.function_one_variable_max_problem.command_line opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution opt.single_objective.glob.function_one_variable_min_problem opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem

molecule (opt.single_objective.comb.drug_discovery_problem.fitness.Fitness attribute) MoleculeBoxes (class in opt.single_objective.comb.drug_discovery_problem.molecule_boxes) molecules (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem property) mousePressEvent() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.ClickableGroupBox method) mutation() (in module opt.single_objective.comb.drug_discovery_problem.solver) MutationInfo (class in opt.single_objective.comb.drug_discovery_problem.mutation_info)

N

name (opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem.DrugDiscoveryProblem attribute) native_representation() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method)

NewMoleculeForm (class in opt.single_objective.comb.drug_discovery_problem.insert_molecule) number_of_intervals (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem property) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution property) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem property)

O

obtain_feasible_representation() (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) on_final_button_clicked() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) on_generate_button_clicked() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) on_launch_button_clicked() (opt.single_objective.comb.drug_discovery_problem.ga_parameters.GAParameters method) on_reset_button_clicked() (opt.single_objective.comb.drug_discovery_problem.hyper_parameters.HyperParameters method) on_restart_button_clicked() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) on_roulette_changed() (opt.single_objective.comb.drug_discovery_problem.ga_parameters.GAParameters method) on_save_button_clicked() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) on_select_all_button_clicked() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) OnesCountMaxProblem (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem), [1] OnesCountMaxProblemBinaryBitArraySolution (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution) OnesCountMaxProblemBinaryIntSolution (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution) OnesCountMaxProblemBitArraySolution (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution) OnesCountMaxProblemIntegerLinearProgrammingSolver (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy), [1] OnesCountMaxProblemIntegerLinearProgrammingSolverConstructionParameters (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy), [1] OnesCountMaxProblemIntSolution (class in opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution) OnesCountMinProblem (class in opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem) opt module opt.multi_objective module opt.single_objective module opt.single_objective.comb module opt.single_objective.comb.drug_discovery_problem module opt.single_objective.comb.drug_discovery_problem.drug_discovery_problem module opt.single_objective.comb.drug_discovery_problem.fitness module opt.single_objective.comb.drug_discovery_problem.ga_parameters module opt.single_objective.comb.drug_discovery_problem.hyper_parameters module opt.single_objective.comb.drug_discovery_problem.individual module opt.single_objective.comb.drug_discovery_problem.insert_molecule module opt.single_objective.comb.drug_discovery_problem.molecule_boxes module opt.single_objective.comb.drug_discovery_problem.mutation_info module opt.single_objective.comb.drug_discovery_problem.solver module opt.single_objective.comb.min_multi_cut_problem module opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem module opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution module

opt.single_objective.comb.min_ones_count_problem module opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem module opt.single_objective.comb.min_set_cover_problem module opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem module opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution module opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy module opt.single_objective.comb.ones_count_max_problem module, [1] opt.single_objective.comb.ones_count_max_problem.command_line module, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem module, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution module opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution module opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution module opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy module, [1] opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution module opt.single_objective.comb.ones_count_min_problem module opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem module opt.single_objective.comb.traveling_salesperson_problem module opt.single_objective.constraint module opt.single_objective.glob module opt.single_objective.glob.function_one_variable_max_problem module opt.single_objective.glob.function_one_variable_max_problem.command_line module opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem module opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution module opt.single_objective.glob.function_one_variable_min_problem module opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem module optimize() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver method), [1] output_control (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolverConstructionParameters property) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolverConstructionParameters property), [1]

P

parse_arguments() (in module opt.single_objective.comb.ones_count_max_problem.command_line), [1] (in module opt.single_objective.glob.function_one_variable_max_problem.command_line)

problem (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolverConstructionParameters property) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolverConstructionParameters property), [1]

Q

qed() (opt.single_objective.comb.drug_discovery_problem.fitness.Fitness method)

R

random() (in module opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution) (in module opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution) (in module opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution) (in module opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution) (in module opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution) remove_boxes() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) remove_new_generation_boxes() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method) remove_selected_boxes() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method)

representation_distance_directly() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) roulette_wheel_selection() (in module opt.single_objective.comb.drug_discovery_problem.solver)

S

selection() (in module opt.single_objective.comb.drug_discovery_problem.solver) set_description() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) set_smiles() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) set_weights() (opt.single_objective.comb.drug_discovery_problem.individual.Individual method) source_terminal_pairs (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem attribute) (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem property) source_terminal_pairs() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) string_rep() (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem.MinMultiCutProblem method) (opt.single_objective.comb.min_multi_cut_problem.min_multi_cut_problem_bit_array_solution.MinMultiCutProblemBitArraySolution method) (opt.single_objective.comb.min_ones_count_problem.min_ones_count_problem.MinOnesCountProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_bit_array_solution.MinSetCoverProblemBitArraySolution method) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolver method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem.OnesCountMaxProblem method), [1] (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_bit_array_solution.OnesCountMaxProblemBinaryBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_binary_int_solution.OnesCountMaxProblemBinaryIntSolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_bit_array_solution.OnesCountMaxProblemBitArraySolution method) (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_ilp_linopy.OnesCountMaxProblemIntegerLinearProgrammingSolver method), [1] (opt.single_objective.comb.ones_count_max_problem.ones_count_max_problem_int_solution.OnesCountMaxProblemIntSolution method) (opt.single_objective.comb.ones_count_min_problem.ones_count_min_problem.OnesCountMinProblem method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem.FunctionOneVariableMaxProblem method) (opt.single_objective.glob.function_one_variable_max_problem.function_one_variable_max_problem_binary_int_solution.FunctionOneVariableMaxProblemBinaryIntSolution method) (opt.single_objective.glob.function_one_variable_min_problem.function_one_variable_min_problem.FunctionOneVariableMinProblem method)

string_representation() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem_ilp_linopy.MinSetCoverProblemIntegerLinearProgrammingSolution method) subsets (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem attribute) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem property) subsets() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) suppress_rdkit_warnings() (in module opt.single_objective.comb.drug_discovery_problem.solver)

T

tanimoto() (opt.single_objective.comb.drug_discovery_problem.molecule_boxes.MoleculeBoxes method)

tournament_selection() (in module opt.single_objective.comb.drug_discovery_problem.solver)

U

universe (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem attribute) (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem property)

universe() (opt.single_objective.comb.min_set_cover_problem.min_set_cover_problem.MinSetCoverProblem method) update_param_label() (opt.single_objective.comb.drug_discovery_problem.hyper_parameters.HyperParameters method)

W

weights (opt.single_objective.comb.drug_discovery_problem.fitness.Fitness attribute)